2026
2
Dynamical mean-field theory of active, self-interacting heteropolymers Preprint
2026.
Repository Abstract Links BibTeX
Mean Field TheoryPolymersSoft Condensed Matter
@preprint{goychuk_gaussian_2026,
title = {Dynamical mean-field theory of active, self-interacting heteropolymers},
author = {Andriy Goychuk},
doi = {10.48550/ARXIV.2604.02085},
year = {2026},
date = {2026-01-01},
urldate = {2026-01-01},
publisher = {arXiv},
abstract = {Analytical theories of polymer dynamics typically focus on the linear response around some steady state obtained via perturbative calculations. The present study derives a dynamical, nonlinear mean-field theory that yields unified access to the evolution of conformations, contact probabilities, and fluctuations of active polymers within a single analytical framework. As in previous mean-field descriptions of passive polymers, the object of interest is the two-point correlator, which is the lowest-order relevant observable in the general Langevin equation of a polymer. In contrast, the present focus is on active polymers driven by heterogeneous monomer-level kicks and spatially correlated active flows, while allowing nonreciprocal couplings, in the presence of hydrodynamic and contact interactions. Using a Gaussian closure to truncate higher-order correlations leads to a self-consistent diffusion equation for the chain correlations. In some cases, this can be further simplified to the dynamics of pairwise squared separations in closed form. In the continuum limit, the theory reveals useful analogies to similar mean-field approximations for reaction-diffusion systems, as well as fractional diffusion in different scale-free regimes. Deriving asymptotic solutions in different parameter regimes of the continuum limit recovers the scalings of coiled, globular, and self-avoiding polymers, thus validating the theory. Applied to hydrodynamically coupled active polymers, such as chromatin, the framework predicts a sequence of crossover scalings between coiled, swollen, and hyper-compacted fractal states.},
keywords = {Mean Field Theory, Polymers, Soft Condensed Matter},
pubstate = {published},
tppubtype = {preprint}
}
Analytical theories of polymer dynamics typically focus on the linear response around some steady state obtained via perturbative calculations. The present study derives a dynamical, nonlinear mean-field theory that yields unified access to the evolution of conformations, contact probabilities, and fluctuations of active polymers within a single analytical framework. As in previous mean-field descriptions of passive polymers, the object of interest is the two-point correlator, which is the lowest-order relevant observable in the general Langevin equation of a polymer. In contrast, the present focus is on active polymers driven by heterogeneous monomer-level kicks and spatially correlated active flows, while allowing nonreciprocal couplings, in the presence of hydrodynamic and contact interactions. Using a Gaussian closure to truncate higher-order correlations leads to a self-consistent diffusion equation for the chain correlations. In some cases, this can be further simplified to the dynamics of pairwise squared separations in closed form. In the continuum limit, the theory reveals useful analogies to similar mean-field approximations for reaction-diffusion systems, as well as fractional diffusion in different scale-free regimes. Deriving asymptotic solutions in different parameter regimes of the continuum limit recovers the scalings of coiled, globular, and self-avoiding polymers, thus validating the theory. Applied to hydrodynamically coupled active polymers, such as chromatin, the framework predicts a sequence of crossover scalings between coiled, swollen, and hyper-compacted fractal states.
2019
1
Protein Recruitment through Indirect Mechanochemical Interactions
Andriy Goychuk; Erwin Frey
In: Physical Review Letters, vol. 123, no. 17, pp. 178101, 2019, ISSN: 0031-9007, 1079-7114.
Analytical TheoryBiomolecular Self-AssemblyElastic DeformationFirst Passage ProblemsMean Field TheoryPattern FormationProtein-Membrane InteractionsProtein-Protein Interactions
@article{goychuk_protein_2019,
title = {Protein Recruitment through Indirect Mechanochemical Interactions},
author = {Andriy Goychuk and Erwin Frey},
url = {https://link.aps.org/doi/10.1103/PhysRevLett.123.178101},
doi = {10.1103/PhysRevLett.123.178101},
issn = {0031-9007, 1079-7114},
year = {2019},
date = {2019-10-01},
urldate = {2026-05-29},
journal = {Physical Review Letters},
volume = {123},
number = {17},
pages = {178101},
abstract = {Some of the key proteins essential for important cellular processes are capable of recruiting other proteins from the cytosol to phospholipid membranes. The physical basis for this cooperativity of binding is, surprisingly, still unclear. Here, we suggest a general feedback mechanism that explains cooperativity through mechanochemical coupling mediated by the mechanical properties of phospholipid membranes. Our theory predicts that protein recruitment, and therefore also protein pattern formation, involves membrane deformation and is strongly affected by membrane composition.},
keywords = {Analytical Theory, Biomolecular Self-Assembly, Elastic Deformation, First Passage Problems, Mean Field Theory, Pattern Formation, Protein-Membrane Interactions, Protein-Protein Interactions},
pubstate = {published},
tppubtype = {article}
}
Some of the key proteins essential for important cellular processes are capable of recruiting other proteins from the cytosol to phospholipid membranes. The physical basis for this cooperativity of binding is, surprisingly, still unclear. Here, we suggest a general feedback mechanism that explains cooperativity through mechanochemical coupling mediated by the mechanical properties of phospholipid membranes. Our theory predicts that protein recruitment, and therefore also protein pattern formation, involves membrane deformation and is strongly affected by membrane composition.